function varargout = untitled(varargin)
% UNTITLED MATLAB code for untitled.fig
%      UNTITLED, by itself, creates a new UNTITLED or raises the existing
%      singleton*.
%
%      H = UNTITLED returns the handle to a new UNTITLED or the handle to
%      the existing singleton*.
%
%      UNTITLED('CALLBACK',hObject,eventData,handles,...) calls the local
%      function named CALLBACK in UNTITLED.M with the given input arguments.
%
%      UNTITLED('Property','Value',...) creates a new UNTITLED or raises the
%      existing singleton*.  Starting from the left, property value pairs are
%      applied to the GUI before untitled_OpeningFcn gets called.  An
%      unrecognized property name or invalid value makes property application
%      stop.  All inputs are passed to untitled_OpeningFcn via varargin.
%
%      *See GUI Options on GUIDE's Tools menu.  Choose "GUI allows only one
%      instance to run (singleton)".
%
% See also: GUIDE, GUIDATA, GUIHANDLES

% Edit the above text to modify the response to help untitled

% Last Modified by GUIDE v2.5 03-Sep-2014 23:06:28

% Begin initialization code - DO NOT EDIT
gui_Singleton = 1;
gui_State = struct('gui_Name',       mfilename, ...
                   'gui_Singleton',  gui_Singleton, ...
                   'gui_OpeningFcn', @untitled_OpeningFcn, ...
                   'gui_OutputFcn',  @untitled_OutputFcn, ...
                   'gui_LayoutFcn',  [] , ...
                   'gui_Callback',   []);
if nargin && ischar(varargin{1})
    gui_State.gui_Callback = str2func(varargin{1});
end

if nargout
    [varargout{1:nargout}] = gui_mainfcn(gui_State, varargin{:});
else
    gui_mainfcn(gui_State, varargin{:});
end
% End initialization code - DO NOT EDIT


% --- Executes just before untitled is made visible.
function untitled_OpeningFcn(hObject, eventdata, handles, varargin)
% This function has no output args, see OutputFcn.
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
% varargin   command line arguments to untitled (see VARARGIN)

% Choose default command line output for untitled
handles.output = hObject;

% Update handles structure
guidata(hObject, handles);

% UIWAIT makes untitled wait for user response (see UIRESUME)
% uiwait(handles.figure1);


% --- Outputs from this function are returned to the command line.
function varargout = untitled_OutputFcn(hObject, eventdata, handles) 
% varargout  cell array for returning output args (see VARARGOUT);
% hObject    handle to figure
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

data = evalin('base','arrayOfAllPathwaysWeights');
dataPathways = evalin('base','analyzedPathways');

%data = evalin('base','aw');
%dataPathways = evalin('base','ap');
handles.data = data;
handles.dataPathways = dataPathways;
guidata(hObject, handles);
fba = cell(size(data(:,2)));
bfba = cell(size(data(:,3)));
rweights = cell(size(data(:,4)));
mweights = cell(size(data(:,5)));
id = cell(size(data(:,1)));

for i=1:length(data(:,2))
    fba{i} = num2str(data(i,2));
    bfba{i} = num2str(data(i,3));
    rweights{i} = num2str(data(i,4));
    mweights{i} = num2str(data(i,5));
    id{i} = num2str(data(i,1));
end
 set(handles.edit1, 'String', '');
formattable(handles.listbox2,{'Reactions count','Objective FBA','Biomass FBA','Reactions weights','Metabolites weights'},...
    id,fba,bfba,rweights,mweights);

% Get default command line output from handles structure
varargout{1} = handles.output;




% --- Executes on button press in pushbutton1.
function pushbutton1_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
 
values = [];
for i=1:length(handles.data) +2
  values =[values, i]; 
end
set(handles.listbox2,'value', values);
guidata(hObject, handles);



% --- Executes on button press in pushbutton2.
function pushbutton2_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
set(handles.listbox2,'value', []);
guidata(hObject, handles);

% --- Executes on button press in pushbutton3.
function pushbutton3_Callback(hObject, eventdata, handles)
% hObject    handle to pushbutton3 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
 val = get(handles.listbox2,'value');
 time =datestr(now,'mmmm dd, yyyy HH-MM-SS');
bar = waitbar(0,'Please wait... Getting pathways information and saving ..,');
 for i=1:length(val)
    waitbar(i/length(val), bar, [num2str(i), ' Pathways of ', num2str(length(val)), ' total' ])
    drawnow

    indx = val(i) - 2;
    if indx<0
        indx = 0;
    end
    if indx>0
      value = 0;
            for j=1:length( handles.dataPathways)
                p = handles.dataPathways(j);
                if p.NUMBER_OF_PATHWAY == handles.data(indx, 6)
                    value = j;
                end
            end
        print_results_of_pathway(value,get(handles.checkbox1, 'Value'), time);
    else
         msgbx = msgbox('Please select value from the list');
    end
 end
close(bar)

% --- Executes on selection change in listbox2.
function listbox2_Callback(hObject, eventdata, handles)
% hObject    handle to listbox2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

    contents = cellstr(get(hObject,'String'));
 
    set(handles.edit1, 'String', '');
    val = get(handles.listbox2,'value');%
 
    if length(val) > 50
        msgbx = msgbox('It is not possible to show data for more then 50 pathways');
    else
        disp('##############################################################');
        disp('##################### RESULTS ###########################');
        contents{get(handles.listbox2,'value')}
        
        if(length(val)) > 1
         bar = waitbar(0,'Please wait... Getting pathways information');
        end
        for i=1:length(val)
             if(length(val)) > 1
                waitbar(i/length(val), bar, [num2str(i), ' Pathways of ', num2str(length(val)), ' total' ])
                drawnow
             end
            indx = val(i) - 2;
            if indx<0
                indx = 0;
            end
            if indx>0
               disp('#######################################');
               var = handles.data(indx, 6)

               if length(val) == 1
                    set(handles.edit1, 'String', '');
               end

            outtext = get(handles.edit1,'String');
            pathway = struct;
            for j=1:length( handles.dataPathways)
                p = handles.dataPathways(j);
                if p.NUMBER_OF_PATHWAY == var
                    pathway = p;
                end
            end
          
            str = print_results_of_pathway_to_results_windows(var, pathway);

            set(handles.edit1, 'String', '');
            s =  evalc('disp(outtext)');

            outtext = [str char(10) s];
            set(handles.edit1, 'String', outtext);
            
             guidata(hObject, handles);
             drawnow update
            end
        end
         if(length(val)) > 1
             close(bar)
         end
    end
    

% --- Executes during object creation, after setting all properties.
function listbox2_CreateFcn(hObject, eventdata, handles)
% hObject    handle to listbox2 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: listbox controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end



function edit1_Callback(hObject, eventdata, handles)
% hObject    handle to edit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hints: get(hObject,'String') returns contents of edit1 as text
%        str2double(get(hObject,'String')) returns contents of edit1 as a double


% --- Executes during object creation, after setting all properties.
function edit1_CreateFcn(hObject, eventdata, handles)
% hObject    handle to edit1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    empty - handles not created until after all CreateFcns called

% Hint: edit controls usually have a white background on Windows.
%       See ISPC and COMPUTER.
if ispc && isequal(get(hObject,'BackgroundColor'), get(0,'defaultUicontrolBackgroundColor'))
    set(hObject,'BackgroundColor','white');
end


% --- Executes on button press in checkbox1.
function checkbox1_Callback(hObject, eventdata, handles)
% hObject    handle to checkbox1 (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)

% Hint: get(hObject,'Value') returns toggle state of checkbox1


% --- Executes on button press in visualizeButton.
function visualizeButton_Callback(hObject, eventdata, handles)
% hObject    handle to visualizeButton (see GCBO)
% eventdata  reserved - to be defined in a future version of MATLAB
% handles    structure with handles and user data (see GUIDATA)
